Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs72966858 chr11:88077728 G/C 0 496 31.28 35.6 5.23 KM Plot
THCA rs72966871 chr11:88082392 G/A 0 497 31.27 35.6 5.23 KM Plot
THCA rs72966872 chr11:88082616 A/G 0 497 31.27 35.6 5.23 KM Plot
THCA rs72966876 chr11:88085625 A/T 0 497 31.27 35.6 5.23 KM Plot
THCA rs72968608 chr11:88099199 C/T 0 494 31.28 35.53 5.23 KM Plot
THCA rs72968617 chr11:88104301 T/C 0 494 31.3 35.2 5.23 KM Plot
THCA rs7299971 chr12:132301053 G/A 0.000152 489 31.88 25.1 47.98 KM Plot
THCA rs73013311 chr11:123528281 A/G 4.12E-5 502 31.92 28.28 24.67 KM Plot
THCA rs73014068 chr19:9922783 T/C 5.3E-6 495 31.43 33.22 32.9 KM Plot
THCA rs73026573 chr6:162405119 C/T 0.0001 502 31.42 33.02 14.08 KM Plot
THCA rs73041736 chr19:33363145 T/G 2.87E-5 501 31.43 34.43 32.93 KM Plot
THCA rs73051153 chr19:33409415 C/T 6.01E-5 502 31.42 35.2 32.93 KM Plot
THCA rs7305137 chr12:104600682 G/A 2.16E-5 499 31.93 29.37 16.8 KM Plot
THCA rs73094218 chr7:32806356 C/T 9.96E-5 500 31.43 31.57 32.1 KM Plot
THCA rs73094232 chr7:32811405 T/C 9.15E-5 501 31.43 31.67 32.1 KM Plot